pybioportal

pybioportal is an open source, BSD-licensed Python library that provides a set of functions to facilitate data acquisition from the cBioPortal Web Public API and the transformation of that data into useful data structures.

It allows users to easily query the cBioPortal public API and retrieve the data directly in the form of a pandas DataFrame, making the data accessible and ready for analysis.

It is an essential tool for researchers and biological data analysts who wish to access and leverage cBioPortal resources for their research and bioinformatic analysis projects.

Where to get it

The source code is currently hosted on GitHub at: https://github.com/Matteo-Valerio/pyBioPortal

Binary installers for the latest released version are available at the Python Package Index (PyPI) and on Anaconda.

# PyPI
pip install pybioportal

# Anaconda
conda install -c matteo.valerio pybioportal

Documentation

The official documentation is hosted on ReadtheDocs.